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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23565999_23576384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23565999 - 23576384
Intron Length:
10386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CCCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CCCTGGCTAACA
Flanking Amino Acid:
QCCNYYYELWWFWLVWTIII
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
58.7
0.22
1.2
67
38
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
40.3
-0.7
2.5
50.88
46.8

Associated Gene:

Gene:
WBP1L
Ensembl Gene ID:
ENSAPLG00000012879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026879
23525630 - 23578361
52732
ENSAPLT00000013408
23547130 - 23578361
31232