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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23572480_23576384_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23572480 - 23576384
Intron Length:
3905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CCCTGGCTAACA
Flanking Amino Acid:
CSFSPSLCDAGFWLVWTIII
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
58.7
0.22
1.2
67
38
Major PPT
72.2
0.5
0.7
64.9
23.7
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
40.3
-0.7
2.5
50.88
46.8

Associated Gene:

Gene:
WBP1L
Ensembl Gene ID:
ENSAPLG00000012879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036201
23525630 - 23578361
52732
ENSAPLT00000028182
23556456 - 23578361
21906