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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23584023_23584100_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23584023 - 23584100
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCCAAG
5'SS Class:
major
3'SS Sequence:
TGTCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
GGGGGCTCAGCT
Flanking Amino Acid:
LLQQKFTEHKETFCGDTVRD
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.2
56
44.7
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
70.4
0.46
1
65.8
35.9
Minor 5ss
37.8
-1.4
3.1
47.9
47.8
Minor BPS
40.7
-0.6
2.1
53.67
47.1

Associated Gene:

Gene:
CYP17A1
Ensembl Gene ID:
ENSAPLG00000012297
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012822
23582711 - 23585776
3066