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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23584188_23584293_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23584188 - 23584293
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTGCTGTAACG
Flanking Amino Acid:
SLVDIFPWLQIFPNKDLALL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
84.9
0.78
0.7
77.7
31
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
57.4
0.09
2.2
70.57
43.2

Associated Gene:

Gene:
CYP17A1
Ensembl Gene ID:
ENSAPLG00000012297
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012822
23582711 - 23585776
3066