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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23586675_23586827_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23586675 - 23586827
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTCAT
U12 Branch Point Sequence:
TTGTTTTCCACA
Flanking Amino Acid:
QEDAILHSEDSLRKMAIITT
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
71.6
40.2
Major BPS
72.4
0.56
1.2
75
39.9
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
41
-1
2.8
49.4
40
Minor BPS
49.3
-0
1.9
66.45
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004416
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004532
23586179 - 23587490
1312