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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23689511_23691602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23689511 - 23691602
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TCTTTTGTTATA
Flanking Amino Acid:
LLAMHRFLATEVEAFGPSQM
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.9
1.15
0.7
89.3
28.6
Major BPS
66.7
0.41
1
57.8
39
Major PPT
84
0.77
0.8
79.8
32.3
Minor 5ss
26
-2.8
4.1
39.6
46.4
Minor BPS
46
-0.3
2.2
61.32
39.6

Associated Gene:

Gene:
CNNM2
Ensembl Gene ID:
ENSAPLG00000013829
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014418
23684062 - 23703382
19321