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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23735642_23746575_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23735642 - 23746575
Intron Length:
10934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTCCCTGACA
Flanking Amino Acid:
LKKYRREAYHRVFVNRSLAM
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
76.6
0.6
0.9
72.5
32.3
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
69.7
0.61
1.7
79.46
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023786
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042021
23735454 - 23746676
11223