About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23781449_23784580_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23781449 - 23784580
Intron Length:
3132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
GATATGATAACA
Flanking Amino Acid:
RQVIGESAVQDGLLVLHYGL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
80.5
0.69
0.7
73.4
31.6
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
45
-0.3
2.2
58.95
40.1

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970