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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23784668_23787781_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23784668 - 23787781
Intron Length:
3114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAC
5'SS Class:
major
3'SS Sequence:
TGGGCTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
TTGAACTTGACT
Flanking Amino Acid:
RKMDLDPACQVDIICGDHLL
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65
41.2
Major BPS
65.1
0.38
1
57
39.5
Major PPT
71
0.47
1
64.3
41.5
Minor 5ss
44.3
-0.6
2.8
58.6
46.2
Minor BPS
65.8
0.58
1.6
81.24
40.3

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970