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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23787881_23791175_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23787881 - 23791175
Intron Length:
3295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGATG
5'SS Class:
major
3'SS Sequence:
TTATTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTATTCTTTACA
Flanking Amino Acid:
GANEGTGNFKPLEKKFVRVS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
63
42.9
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
89.2
0.88
0.7
84.2
30.5
Minor 5ss
28.7
-2.4
3.4
38.8
46.5
Minor BPS
71
0.66
1.6
79.75
35.8

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970