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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23791204_23795418_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23791204 - 23795418
Intron Length:
4215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGTGTTTACTC
Flanking Amino Acid:
LDISILLEFIGANEGTGNFK
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
42.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
50.1
-0
2
65.12
41.8

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970