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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23796182_23797215_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23796182 - 23797215
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCCGTATTG
Flanking Amino Acid:
VYKLVVNLEEREKKQMHDFY
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
54.8
0.01
2.3
70.91
42.8

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970