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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23797272_23797859_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23797272 - 23797859
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTTGATA
Flanking Amino Acid:
VHQTQPLYNIRLDRQLQDIV
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.6
0.62
0.9
76
32.7
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
74
0.75
1.1
77.56
33.5

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970