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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23798587_23799311_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23798587 - 23799311
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTGCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TATATTTAAACT
Flanking Amino Acid:
GELDSDDDRERMINLAELTP
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
59.8
0.39
1.7
77.15
39.5

Associated Gene:

Gene:
PCGF6
Ensembl Gene ID:
ENSAPLG00000026176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048348
23779994 - 23799963
19970