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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23806456_23807170_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23806456 - 23807170
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATTCTATACTT
Flanking Amino Acid:
PVYGTSFSPDRNYLLSCSED
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82.2
0.72
0.9
76
38
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
49.6
0.05
1.9
69.44
42.1

Associated Gene:

Gene:
TAF5
Ensembl Gene ID:
ENSAPLG00000011406
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034303
23799857 - 23809855
9999
ENSAPLT00000011907
23799857 - 23810393
10537