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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23807336_23807747_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23807336 - 23807747
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTATATTAATA
Flanking Amino Acid:
FVSGGHDRVARLWATDHYQP
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
59.3
0.29
1.6
68.65
37.9

Associated Gene:

Gene:
TAF5
Ensembl Gene ID:
ENSAPLG00000011406
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034303
23799857 - 23809855
9999
ENSAPLT00000011907
23799857 - 23810393
10537