About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23808296_23808637_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23808296 - 23808637
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
FSRDGEILASGSMDNTVRLW
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.6
0.76
0.9
85.6
26.3
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
TAF5
Ensembl Gene ID:
ENSAPLG00000011406
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034303
23799857 - 23809855
9999
ENSAPLT00000011907
23799857 - 23810393
10537