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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23808764_23809525_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23808764 - 23809525
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATACA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCTGTTTTCACA
Flanking Amino Acid:
LPENSQDLLLGSLLLLCDEQ
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.2
36.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84
0.76
0.8
79.1
32.9
Minor 5ss
34.3
-1.8
2.9
43.6
43.5
Minor BPS
52.4
0.07
1.8
65.59
41.9

Associated Gene:

Gene:
TAF5
Ensembl Gene ID:
ENSAPLG00000011406
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011907
23799857 - 23810393
10537