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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23811884_23811975_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23811884 - 23811975
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TTATGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
GTAACCATAACT
Flanking Amino Acid:
NSYTMVGRRNYVIATYTGVA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
84
34
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
86.8
0.83
0.8
84.8
35.6
Minor 5ss
43
-0.8
3.1
64.2
40.3
Minor BPS
64.8
0.54
1.7
80.24
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019499
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027429
23810798 - 23814267
3470