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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23812688_23813289_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23812688 - 23813289
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CCTCTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCC
Flanking Amino Acid:
LRKGRARRRPRVLVATASLH
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79
0.65
0.9
73
36
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
51.6
0.03
2.2
73.08
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019499
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027429
23810798 - 23814267
3470