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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23814406_23814960_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23814406 - 23814960
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTACGTTGT
5'SS Class:
major
3'SS Sequence:
TAATCTAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATAATCTAAATT
Flanking Amino Acid:
PTTEQDNLFDVRHEEQSQKR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
69.9
43.4
Major BPS
100
1.24
0.5
100
0
Major PPT
58.4
0.19
1
57.9
41.7
Minor 5ss
42.2
-0.9
3.1
56.7
41.5
Minor BPS
55.8
0.26
1.7
71.47
39.7

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387