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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23815439_23816143_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23815439 - 23816143
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GACTATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTTTTATGACT
Flanking Amino Acid:
KQVAQGEVLEDLHSLLDMYS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.3
0.52
1
65.7
40.3
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
56.2
0.28
1.6
73.31
37.8

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387