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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23818954_23819278_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23818954 - 23819278
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTTCCAGACAC
Flanking Amino Acid:
LDDGTHAFARLKHLSKNRKS
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
48.4
-0.1
2.1
69.94
40.8

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387