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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23819404_23820011_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23819404 - 23820011
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GTCTCTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCGTCTCTTACT
Flanking Amino Acid:
MDEMCILSLKYQVIGARFLQ
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.9
36
Major BPS
69.2
0.48
1
61
37.1
Major PPT
75.8
0.58
0.8
68.9
37.1
Minor 5ss
35.8
-1.6
3.2
46.7
36.7
Minor BPS
51.6
0.13
2
72.35
44.7

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387