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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23820597_23820722_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23820597 - 23820722
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TCTACTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTTTTTAAACA
Flanking Amino Acid:
YNVGDEVKCRVLECNPAEKK
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.6
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
73.5
31.3
Minor 5ss
27.2
-2.6
3.3
31.5
42.2
Minor BPS
65.1
0.47
1.6
75.16
36.6

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387