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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23821417_23822050_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23821417 - 23822050
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGAAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGTTCTATACCA
Flanking Amino Acid:
KQEVKYQIGEMVDVKVLKKK
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.2
37.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
40.1
-1.1
3.2
57
47.4
Minor BPS
50.8
0.02
1.9
65.84
40.3

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387