Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23825078_23826103_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23825078 - 23826103

Intron Length:

1026

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGACAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTGTTCTCATTT

Flanking Amino Acid:

TVTATRYHLGDKSIAPGEKT

Intron Amino Acid Position:

888

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

71.6

40.1

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

0.72

0.7

77.6

29.9

Minor 5ss

32.2

-2

3.4

46.9

48.4

Minor BPS

55.6

0.25

1.8

75.42

Associated Gene:

Gene:

PDCD11

Ensembl Gene ID:

ENSAPLG00000010301

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010824

23812910 - 23837296

24387