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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23830826_23831395_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23830826 - 23831395
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TACTTTCTAACC
Flanking Amino Acid:
GKIQLSLRQSRLNPRNSSKV
Intron Amino Acid Position:
1296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.3
0.82
0.6
85.6
21.7
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
58.2
0.24
1.7
67.47
38.2

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387