About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23831923_23832141_F

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23831923 - 23832141
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CAATGAACTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTTTTCTAACC
Flanking Amino Acid:
EGKFLTAKVLGVNKKENHIE
Intron Amino Acid Position:
1378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
49.9
-0
1.1
47.1
39.2
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
63.2
0.39
1.7
74.1
37

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387