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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23835431_23835683_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23835431 - 23835683
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTAATCCAACT
Flanking Amino Acid:
DIYANSEKYKQAEELYHTML
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
45.3
-0.2
2
66.82
43.5

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387