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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23836514_23837124_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23836514 - 23837124
Intron Length:
611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CGATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
GTGACCTGAATC
Flanking Amino Acid:
MIKHGSQKEVRDIFEKVIHL
Intron Amino Acid Position:
1784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
81.9
0.72
0.9
76.5
37.3
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
59.6
0.28
1.5
65.1
40.3

Associated Gene:

Gene:
PDCD11
Ensembl Gene ID:
ENSAPLG00000010301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010824
23812910 - 23837296
24387