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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23841506_23841584_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23841506 - 23841584
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTGCCTTGATA
Flanking Amino Acid:
VTRRLRYESQLFGWLLIGIV
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.5
0.73
0.8
80.6
30.1
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
65.1
0.47
1.4
67.99
38.9

Associated Gene:

Gene:
CALHM2
Ensembl Gene ID:
ENSAPLG00000019475
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030470
23841089 - 23842565
1477