About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23859371_23860140_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23859371 - 23860140
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
ACCCACACACCT
Flanking Amino Acid:
GRRRKDPAVIRYMCSSIMQR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
70
0.45
0.9
60.4
35.3
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
37.6
-0.8
2
50.11
43.1

Associated Gene:

Gene:
CALHM3
Ensembl Gene ID:
ENSAPLG00000015563
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016221
23857903 - 23860427
2525