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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_23941797_23965443_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23941797 - 23965443
Intron Length:
23647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
ATTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTCATTC
Flanking Amino Acid:
GGQVTRGAPHDSIGGSFPAS
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
64.8
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.9
77.7
36.1
Minor 5ss
30.1
-2.3
3.5
41.6
45.3
Minor BPS
64.9
0.45
1.8
78.68
37.2

Associated Gene:

Gene:
NEURL1
Ensembl Gene ID:
ENSAPLG00000006704
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006958
23941763 - 24023976
82214