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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24042260_24042392_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24042260 - 24042392
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTGTGTAAGT
Flanking Amino Acid:
ISFRGGQKAEVIEKNSGGWW
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.3
0.48
0.9
65.3
36
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
48.2
-0
2.6
78.9
44

Associated Gene:

Gene:
SH3PXD2A
Ensembl Gene ID:
ENSAPLG00000006691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023035
24040367 - 24268967
228601
ENSAPLT00000045467
24040367 - 24106423
66057
ENSAPLT00000021321
24039734 - 24268967
229234
ENSAPLT00000045338
24039734 - 24210668
170935
ENSAPLT00000006940
24040367 - 24102759
62393
ENSAPLT00000033859
24003183 - 24268967
265785
ENSAPLT00000026005
24040367 - 24210668
170302