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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24051855_24067643_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24051855 - 24067643
Intron Length:
15789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTCCCTTCACT
Flanking Amino Acid:
SDINTSKTGEEEKYVTIQPY
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
68.4
0.41
0.8
62.5
33.2
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
70.7
0.73
1.8
85.35
41

Associated Gene:

Gene:
SH3PXD2A
Ensembl Gene ID:
ENSAPLG00000006691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026005
24040367 - 24210668
170302