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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24063118_24067643_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
24063118 - 24067643
Intron Length:
4526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTCCAAACTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATG
Flanking Amino Acid:
SDINTSKTGEVSKRRKAHLR
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
56.8
0.15
1
49.6
38.3
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
60.7
0.19
1.7
68.66
39

Associated Gene:

Gene:
SH3PXD2A
Ensembl Gene ID:
ENSAPLG00000006691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023035
24040367 - 24268967
228601
ENSAPLT00000021321
24039734 - 24268967
229234
ENSAPLT00000045467
24040367 - 24106423
66057
ENSAPLT00000006940
24040367 - 24102759
62393
ENSAPLT00000045338
24039734 - 24210668
170935
ENSAPLT00000033859
24003183 - 24268967
265785