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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24176786_24184584_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24176786 - 24184584
Intron Length:
7799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTTCTGAGTG
Flanking Amino Acid:
RLKPIDEYCRALVRLPPHIS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
75
0.62
1
65.3
41.5
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
57.5
0.1
1.7
67.82
40.2

Associated Gene:

Gene:
SH3PXD2A
Ensembl Gene ID:
ENSAPLG00000006691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023035
24040367 - 24268967
228601
ENSAPLT00000021321
24039734 - 24268967
229234
ENSAPLT00000045338
24039734 - 24210668
170935
ENSAPLT00000033859
24003183 - 24268967
265785
ENSAPLT00000026005
24040367 - 24210668
170302