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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24184662_24210307_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24184662 - 24210307
Intron Length:
25646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
GTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGCTCCTAAACC
Flanking Amino Acid:
PKQRIIPFLPGKILFRRSHV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
83.2
0.75
0.8
77.4
31.3
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
68.8
0.57
1.7
75.07
41.7

Associated Gene:

Gene:
SH3PXD2A
Ensembl Gene ID:
ENSAPLG00000006691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023035
24040367 - 24268967
228601
ENSAPLT00000021321
24039734 - 24268967
229234
ENSAPLT00000045338
24039734 - 24210668
170935
ENSAPLT00000033859
24003183 - 24268967
265785
ENSAPLT00000026005
24040367 - 24210668
170302