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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_2426552_2437260_R

Intron Information:

Intron Rank:
145163
Intron Class:
major
Intron Phase:
Intron Coordinates:
2426552 - 2437260
Intron Length:
10709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AGGTGTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AAATCTGCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74
0.54
1
69.7
45.4
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
42.8
-0.4
2.3
60.52
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025520
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021345
2426484 - 2437546
11063