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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24293466_24294223_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24293466 - 24294223
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCCTTTTAACC
Flanking Amino Acid:
KPFQSPGEGQSGPEGLDFSI
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.5
0.69
0.9
73.8
36.7
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
65.1
0.45
1.3
66.58
39.6

Associated Gene:

Gene:
STN1
Ensembl Gene ID:
ENSAPLG00000006661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030730
24281686 - 24322501
40816
ENSAPLT00000006921
24281686 - 24308392
26707