About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24297367_24301757_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24297367 - 24301757
Intron Length:
4391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
CTCCCTGTAACT
Flanking Amino Acid:
KERDAFYSYGVDDSTGVINC
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
53.5
0.19
2.1
72.56
44.8

Associated Gene:

Gene:
STN1
Ensembl Gene ID:
ENSAPLG00000006661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006921
24281686 - 24308392
26707
ENSAPLT00000030730
24281686 - 24322501
40816