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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24306357_24316875_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24306357 - 24316875
Intron Length:
10519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TGGACAATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
73.9
0.54
0.9
67.2
38
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
50.5
0.1
2
72.34
43.6

Associated Gene:

Gene:
STN1
Ensembl Gene ID:
ENSAPLG00000006661
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030730
24281686 - 24322501
40816