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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24322639_24342420_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24322639 - 24342420
Intron Length:
19782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCCG
5'SS Class:
major
3'SS Sequence:
ACTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTGCTGTAACT
Flanking Amino Acid:
GDGAFGKVFKAQNKETKVLA
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
58.1
46.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89
0.88
0.7
83.7
30.6
Minor 5ss
30
-2.3
3.4
39.4
46
Minor BPS
59.8
0.39
2.1
81.74
40.3

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045620
24322489 - 24361680
39192
ENSAPLT00000006485
24322489 - 24361680
39192