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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24346011_24346821_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24346011 - 24346821
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTCTCTTCAAG
Flanking Amino Acid:
AGGAVDAVMLELERPLTEPQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
71.2
40.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77.1
0.61
1
75.5
33.4
Minor 5ss
34
-1.8
2.8
33.5
41.9
Minor BPS
52.7
-0
2
65.72
41.9

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006485
24322489 - 24361680
39192
ENSAPLT00000045620
24322489 - 24361680
39192