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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24348206_24348412_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24348206 - 24348412
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTTTCTAACCT
Flanking Amino Acid:
RRDSFIGTPYWMAPEVVMCE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83
0.74
0.9
77
36.5
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
59.7
0.38
1.9
81.49
40.5

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045620
24322489 - 24361680
39192
ENSAPLT00000006485
24322489 - 24361680
39192