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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24353867_24355164_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24353867 - 24355164
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATGTTTTATT
Flanking Amino Acid:
NKETGSISLQETRRQKKTLK
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.7
0.67
0.9
78.2
39.8
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
48.8
-0
2
68.89
42.7

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006485
24322489 - 24361680
39192
ENSAPLT00000045620
24322489 - 24361680
39192