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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24356098_24359295_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24356098 - 24359295
Intron Length:
3198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTATTCTGACAT
Flanking Amino Acid:
QNMLKNKKKEGVAQVMIQSF
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
75.4
0.57
0.9
69.2
37.1
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
48.6
-0
1.8
67.71
42.4

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045620
24322489 - 24361680
39192