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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24359368_24361486_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24359368 - 24361486
Intron Length:
2119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTATTT
Flanking Amino Acid:
CTLFNAQMQDEQEFVQKQQQ
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.8
0.47
1
63.7
42.8
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
55.6
0.26
1.8
77.46
39.3

Associated Gene:

Gene:
SLK
Ensembl Gene ID:
ENSAPLG00000006212
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045620
24322489 - 24361680
39192