Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_24372105_24372288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24372105 - 24372288

Intron Length:

184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGACG

5'SS Class:

major

3'SS Sequence:

TCCTTGTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCAAT

U12 Branch Point Sequence:

CTTTCAATATCC

Flanking Amino Acid:

RGPKGEKGEKGEQVYVGRRK

Intron Amino Acid Position:

1476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

44.2

Major BPS

76.9

0.67

1.2

31.9

Major PPT

71.3

0.48

64.1

41.6

Minor 5ss

31.2

-2.2

3.3

39.9

45.9

Minor BPS

48.9

-0.1

2.1

68.61

42.5

Associated Gene:

Gene:

COL17A1

Ensembl Gene ID:

ENSAPLG00000006175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038480

24371956 - 24403839

31884

ENSAPLT00000019160

24371956 - 24403839

31884

ENSAPLT00000006397

24371956 - 24403839

31884